BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB031H03LP1|AL429471
(423 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1242 801 0.0
3x_Contig81 248 8e-66
>3x_Contig1242
Length = 5614
Score = 801 bits (401), Expect = 0.0
Identities = 414/421 (98%)
Strand = Plus / Plus
Query: 1 gatcagatgtcccattggcagattacgtgcctccgtacacagaagaagccaatgaraacg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 2683 gatcagatgtcccattggcagattacgtgcctccgtacacagaagaagcaaatgaaaacg 2742
Query: 61 atttgggttactacgatcgtgatgggatattccacgtgaacagtaaagccgaccctccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 atttgggttactacgatcgtgatgggatattccacgtgaacagtaaagccgaccctccac 2802
Query: 121 caccgatagatgcgtatgtgctagagcatcgaaacgatagggatacggatatgatagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 caccgatagatgcgtatgtgctagagcatcgaaacgatagggatacggatatgatagatt 2862
Query: 181 tggaaatgcaacggaccacggctacggcccagcmattgccggcatataatgatgtacctg 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2863 tggaaatgcaacggaccacggctacggcccagcaattgccggcatataatgatgtacctg 2922
Query: 241 aatcggagactgttgaagcctctcgacaaaaccctgaatcagcccaacaacgacggtcat 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2923 aatcggagactgtagaagcctctcgacaaaaccctgaatcagcccaacaacgacggtcat 2982
Query: 301 catctgtgtcaacactaatccctgaagcrccggctgctacmaatctccggtgaaaacgta 360
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 2983 catctgtgtcaacactaatccctgaagcaccggctgctacaaatctccggtgaaaacgta 3042
Query: 361 atacaagccatttaatgatcttcaacaaactttctacacatcatcgactctctctctctc 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3043 atacaagccattaaatgatcttcaacaaactttctacacatcatcgactctctctctctc 3102
Query: 421 t 421
|
Sbjct: 3103 t 3103
>3x_Contig81
Length = 1068
Score = 248 bits (124), Expect = 8e-66
Identities = 148/156 (94%), Gaps = 1/156 (0%)
Strand = Plus / Minus
Query: 267 caaaaccctgaatcagcccaac-aacgacggtcatcatctgtgtcaacactaatccctga 325
|||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 580 caaaacccagtatcagcccaattaacgacgttcatcatctgtgtcaacactaatccctga 521
Query: 326 agcrccggctgctacmaatctccggtgaaaacgtaatacaagccatttaatgatcttcaa 385
||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 520 agcaccggctgctacaaatctccggtgaaaacgtaatacaagccattaaatgatcttcaa 461
Query: 386 caaactttctacacatcatcgactctctctctctct 421
||||||||||||||||||||||||||||||||||||
Sbjct: 460 caaactttctacacatcatcgactctctctctctct 425
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.32
Gapped
Lambda K H
1.38 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2228
Number of Sequences: 1807
Number of extensions: 2228
Number of successful extensions: 152
Number of sequences better than 1.0e-20: 2
length of query: 423
length of database: 10,358,551
effective HSP length: 15
effective length of query: 408
effective length of database: 10,331,446
effective search space: 4215229968
effective search space used: 4215229968
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.4 bits)